[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: sone & k)

PDB-8rx0:
(NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub
Method: single particle / : Crowe C, Nakasone MA

EMDB-19567:
Closed crosslinked structure of (NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub
Method: single particle / : Ciulli A, Crowe C, Nakasone MA

EMDB-19569:
Open non-crosslinked structure Brd4BD2-MZ1-(NEDD8)-CRL2VHL
Method: single particle / : Ciulli A, Crowe C, Nakasone MA

EMDB-29298:
The structure of a hibernating ribosome in the Lyme disease pathogen
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

EMDB-29304:
The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

PDB-8fmw:
The structure of a hibernating ribosome in the Lyme disease pathogen
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

PDB-8fn2:
The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

EMDB-17172:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

PDB-8ov6:
Ternary structure of intramolecular bivalent glue degrader IBG1 bound to BRD4 and DCAF16:DDB1deltaBPB
Method: single particle / : Cowan AD, Sundaramoorthy R, Nakasone MA, Ciulli A

EMDB-29397:
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Method: single particle / : Majumdar S, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8fr8:
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Method: single particle / : Majumdar S, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-16226:
Giardia Ribosome in PRE-T Classical State (C)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-16228:
Giardia Ribosome in PRE-T Hybrid State (D1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-16235:
Giardia Ribosome in PRE-T Hybrid State (D2)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8bsj:
Giardia Ribosome in PRE-T Classical State (C)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8btd:
Giardia Ribosome in PRE-T Hybrid State (D1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8btr:
Giardia Ribosome in PRE-T Hybrid State (D2)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-16211:
Giardia ribosome in POST-T state (A1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-16222:
Giardia ribosome in POST-T state, no E-site tRNA (A6)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-16225:
Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8br8:
Giardia ribosome in POST-T state (A1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8brm:
Giardia ribosome in POST-T state, no E-site tRNA (A6)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

PDB-8bsi:
Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)
Method: single particle / : Majumdar S, Emmerich AG, Sanyal S

EMDB-30440:
Cryo-EM analysis of the nonribosomal peptide synthetase, FmoA3
Method: single particle / : Sone K, Harada A, Kawai S, Urano N, Adachi N, Moriya T, Kawasaki M, Katsuyama Y, Senda T, Ohnishi Y

EMDB-23211:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

EMDB-23215:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

PDB-7l7f:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

PDB-7l7k:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

EMDB-8166:
Structure of the S. cerevisiae alpha-mannosidase 1
Method: single particle / : Schneider S, Kosinski J

EMDB-8167:
Structure of S. cerevesiae mApe1 dodecamer
Method: single particle / : Sachse C, Bertipaglia C

PDB-5jm0:
Structure of the S. cerevisiae alpha-mannosidase 1
Method: single particle / : Schneider S, Kosinski J, Jakobi AJ, Hagen WJH, Sachse C

PDB-5jm9:
Structure of S. cerevesiae mApe1 dodecamer
Method: single particle / : Sachse C, Bertipaglia C

EMDB-2896:
Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes
Method: single particle / : Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJH, Schulz J, Meijers R, Rybin V, Briggs JAG, Sachse C, Kaksonen M

EMDB-2897:
Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes
Method: single particle / : Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJH, Schulz J, Meijers R, Rybin V, Briggs JAG, Sachse C, Kaksonen M

PDB-5ahv:
Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes
Method: single particle / : Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJH, Schulz J, Meijers R, Rybin V, Briggs JAG, Sachse C, Kaksonen M

PDB-4bip:
Homology model of coxsackievirus A7 (CAV7) full capsid proteins.
Method: single particle / : Seitsonen JJT, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvonen H, Laurinmaki P, Yla-Pelto J, Topf M, Hyypia T, Butcher SJ

PDB-4biq:
Homology model of coxsackievirus A7 (CAV7) empty capsid proteins.
Method: single particle / : Seitsonen JJT, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvonen H, Laurinmaki P, Yla-Pelto J, Topf M, Hyypia T, Butcher SJ

EMDB-5512:
Icosahedral reconstruction of filled coxsackievirus A9 capsid-integrin alpha v beta 6 complex
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-5514:
Icosahedral reconstruction of empty coxsackievirus A9 capsid-integrin alpha v beta 6 complex
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-5515:
Icosahedral reconstruction of filled coxsackievirus A9 capsid
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-5516:
Icosahedral reconstruction of empty coxsackievirus A9 capsid
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-5517:
Asymmetric reconstruction of filled-integrin alpha v beta 6 complex
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-5519:
Electron cryo-tomography of coxsackievirus A9-integrin alpha v beta 6 complex
Method: electron tomography / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

PDB-3j2j:
Empty coxsackievirus A9 capsid
Method: single particle / : Shakeel S, Seitsonen JJT, Kajander T, Laurinmaki P, Hyypia T, Susi P, Butcher SJ

EMDB-2027:
Coxsackievirus A7 (CAV7) empty capsid reconstruction at 6.09 angstrom resolution.
Method: single particle / : Seitsonen JJT, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvonen H, Laurinmaki P, Yla-Pelto J, Topf M, Hyypia T, Butcher SJ

EMDB-2028:
Coxsackievirus A7 (CAV7) full capsid reconstruction at 8.23 angstrom resolution.
Method: single particle / : Seitsonen JJT, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvonen H, Laurinmaki P, Yla-Pelto J, Topf M, Hyypia T, Butcher SJ

EMDB-1688:
CryoEM reconstruction of human parechovirus 1 complexed with integrin alphaV-beta3
Method: single particle / : Seitsonen JJT, Susi P, Heikkila O, Laurinmaki P, Hyypia T, Butcher SJ

EMDB-1689:
CryoEM reconstruction of human parechovirus 1 complexed with integrin alphaV-beta6
Method: single particle / : Seitsonen JJT, Susi P, Heikkila O, Laurinmaki P, Hyypia T, Butcher SJ

EMDB-1690:
CryoEM reconstruction of human parechovirus 1
Method: single particle / : Seitsonen JJT, Susi P, Heikkila O, Laurinmaki P, Hyypia T, Butcher SJ

EMDB-1422:
Structure and composition of the Shigella flexneri "needle complex", a part of its type III secreton.
Method: single particle / : Blocker AJ, Jouihri N, Larquet E, Gounon P, Ebel F, Parsot C, Sansonetti P, Allaoui A

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more